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Pumpkin disease not evolving, could make a difference for management

Two split images with a person researching in a greenhouse on left and orange pumpkin on right.

The pathogen that causes bacterial spot is very good at what it does. Forming small lesions on the rinds of pumpkins, melons, cucumbers, and other cucurbits, it mars the fruits’ appearance and ushers in secondary pathogens that lead to rot and severe yield loss. The bacterium, Xanthomonas cucurbitae, is so successful that it has had no reason to evolve through time or space. That’s according to new University of Illinois Urbana-Champaign research characterizing the pathogen’s genetic diversity across the Midwest. 

“Previously, we sequenced the Xanthomonas cucurbitae genome from a sample taken in New York in 1926. In our current study, we sequenced genomes of samples taken by our collaborators across the Midwest in 2012 and 2013. All of the genomes were really quite similar, greater than 99% identical, but one isolate from Michigan was 99.9% identical to that 1926 isolate. Our results show there's been very little pressure on this pathogen to evolve,” said Sarah Hind, assistant professor in the Department of Crop Sciences, part of the College of Agricultural, Consumer and Environmental Sciences, ACES, at Illinois.

The surprising result suggests the pathogen is a one-trick pony. It surges reliably under specific conditions — hot and wet — and lurks quietly in the background otherwise. But the genetic uniformity could be good news for breeders looking to develop resistant crops. 

Read the full release from College of ACES. 

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Illinois Extension leads public outreach for University of Illinois by translating research into action plans that allow Illinois families, businesses, and community leaders to solve problems, make informed decisions, and adapt to changes and opportunities. Illinois Extension is part of the University of Illinois Urbana-Champaign College of Agricultural, Consumer and Environmental Sciences.